1. - the karma voting div appears wherever this code exists in your template's entries.tpl:
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{serendipity_hookPlugin hook="entries_footer"}
Your template may not have a custom version of entries.tpl, in which case it will use the version from the default template. If you want to modify the file, I suggest you first copy it to your template's folder. If you do reposition it, keep in mind that anything using the entries_footer hook will also be relocated.
2. You can use the quicksearch code from the bulletproof template. As Garvin mentioned, place it in your template's index.tpl. Here is the code:
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<form id="searchform" action="{$serendipityHTTPPath}{$serendipityIndexFile}" method="get">
<input type="hidden" name="serendipity[action]" value="search" />
<input alt="{$CONST.QUICKSEARCH}" type="text" id="serendipityQuickSearchTermField" name="serendipity[searchTerm]" value="{$CONST.QUICKSEARCH}..." onfocus="if(this.value=='{$CONST.QUICKSEARCH}...')value=''" onblur="if(this.value=='')value='{$CONST.QUICKSEARCH}...';" />
<div id="LSResult" style="display: none;"><div id="LSShadow"></div></div>
</form>
{serendipity_hookPlugin hook="quicksearch_plugin" hookAll="true"}